Complex regions of Y Chromosome that could
generate errors into phylogenetic studies
Region	Coordinates
	Start	End
PAR1	1	2781479
LTR2	2997393	2998942
HSA	7228670	7229600
CER3	7295058	7295821
CER6	7301890	7302401
CER7	7303737	7305018
CER9	7366890	7367378
CER12	7451057	7451485
CEN	10072350	11686750
CER15	11930845	11930917
CER17	12362517	12363336
CER18	12363524	12364177
CER19	12369399	12369930
ARSDP	12379765	12380130
VCY	13985772	13986512
VCY	14056218	14056958
DYZ 19	20054914	20351054
PPR	26637971	26673210
PAR2	56887903	57217415
Those sections of the Y chromosome suffer from frequent recombination events and are therefore not useful for phylogenetic studies. The SNPs that falls under those positions could be false positives.